JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VCPIP1_chr8_66623487_66672231	0/0	g0224	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0225	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0226	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0227	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0228	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0229	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0230	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0231	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0232	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0233	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0234	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0235	1	0	1	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0236	1	0	1	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0237	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0238	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0239	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0240	1	0	0	0	0	1	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0241	1	0	0	0	0	1	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0242	1	0	0	0	1	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0243	1	0	1	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0244	1	0	1	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0245	1	0	1	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0246	1	0	1	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0247	1	0	1	0	0	0	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	g0248	1	1	0	0	0	0	VCPIP1	chr8	66623487	66672231
VCPKMT_chr14_50103637_50121572	0/0	g0001	24	0	7	12	0	5	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0002	18	3	4	11	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0003	16	1	3	7	0	5	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0004	12	2	5	4	0	1	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0005	12	0	3	7	1	1	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0006	11	0	3	8	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0007	11	0	1	6	1	3	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0008	10	0	2	8	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0009	9	2	3	2	1	1	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0010	9	0	2	6	1	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0011	9	0	1	4	0	4	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0012	7	0	2	5	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0013	7	0	0	7	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0014	6	2	0	2	0	2	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0015	6	0	1	5	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0016	6	3	0	2	0	1	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0017	5	0	3	2	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0018	5	1	3	0	1	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	1/0	g0019	5	0	0	1	1	2	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0020	4	0	0	4	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0021	4	2	0	0	1	1	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0022	4	3	1	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0023	4	1	2	0	1	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0024	4	0	0	2	0	2	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0025	4	4	0	0	0	0	VCPKMT	chr14	50103637	50121572