JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VCPKMT_chr14_50103637_50121572	0/1	g0176	1	0	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0177	1	0	1	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0178	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0179	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0180	1	1	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0181	1	0	0	0	0	1	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0182	1	0	1	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0183	1	1	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0184	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0185	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0186	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0187	1	0	1	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0188	1	0	1	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0189	1	0	0	0	0	1	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0190	1	0	1	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0191	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0192	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0193	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0194	1	0	0	0	0	1	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0195	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0196	1	1	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0197	1	0	0	0	0	1	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0198	1	0	0	0	0	1	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0199	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0200	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0201	1	1	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0202	1	1	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0203	1	1	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0204	1	1	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0205	1	1	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0206	1	1	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0207	1	1	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0208	1	1	0	0	0	0	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	g0209	1	0	0	1	0	0	VCPKMT	chr14	50103637	50121572
VCP_chr9_35051064_35077625	0/0	g0001	42	4	4	28	1	5	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0002	41	0	1	40	0	0	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0003	17	1	0	15	0	1	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0004	15	1	9	0	0	5	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0005	13	0	12	0	0	1	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0006	12	2	1	9	0	0	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0007	11	1	0	8	0	2	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0008	11	0	4	0	2	5	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0009	10	1	4	0	2	3	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	1/1	g0010	9	6	0	1	0	0	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0011	9	5	2	2	0	0	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0012	9	0	0	9	0	0	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0013	9	0	0	8	0	1	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0014	7	0	1	2	2	2	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0015	6	4	2	0	0	0	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	g0016	5	5	0	0	0	0	VCP	chr9	35051064	35077625