JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VDAC1_chr5_133966871_134009975	0/0	g0306	1	0	1	0	0	0	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	g0307	1	0	1	0	0	0	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	g0308	1	1	0	0	0	0	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	g0309	1	1	0	0	0	0	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	g0310	1	0	0	1	0	0	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	g0311	1	0	1	0	0	0	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	g0312	1	0	0	0	0	1	VDAC1	chr5	133966871	134009975
VDAC2_chr10_75205796_75236448	1/0	g0001	44	15	11	7	3	7	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0002	39	1	3	33	1	1	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0003	22	1	5	11	3	2	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0004	21	0	3	14	2	2	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0005	9	0	0	9	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0006	7	0	2	3	0	2	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0007	7	0	0	7	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0008	6	3	0	2	0	1	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0009	6	1	5	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0010	5	4	1	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0011	5	0	5	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0012	5	0	0	5	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0013	5	5	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0014	5	5	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0015	4	0	1	2	0	1	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0016	4	0	2	2	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0017	4	4	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0018	3	0	0	1	0	2	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0019	3	0	0	3	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0020	3	0	0	3	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0021	3	0	0	3	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0022	3	1	0	2	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0023	3	0	0	3	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0024	3	2	1	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0025	2	0	1	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0026	2	1	1	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0027	2	2	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0028	2	2	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0029	2	0	0	2	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/1	g0030	2	0	0	0	0	1	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0031	2	0	1	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0032	2	0	0	2	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0033	2	0	0	2	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0034	2	2	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0035	2	0	0	2	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0036	2	0	0	2	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0037	2	0	1	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0038	2	2	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0039	2	0	0	2	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0040	2	0	0	2	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0041	2	0	0	2	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0042	2	2	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0043	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448