JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VDAC2_chr10_75205796_75236448	0/0	g0144	1	0	0	0	0	1	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0145	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0146	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0147	1	0	0	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0148	1	0	0	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0149	1	0	0	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0150	1	0	0	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0151	1	0	1	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0152	1	0	1	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0153	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0154	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0155	1	0	0	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0156	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0157	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0158	1	0	0	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0159	1	0	1	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0160	1	0	0	0	0	1	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0161	1	0	1	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0162	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0163	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0164	1	0	1	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0165	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0166	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0167	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0168	1	0	0	0	1	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0169	1	0	1	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0170	1	0	1	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0171	1	0	0	0	0	1	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0172	1	0	0	0	0	1	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0173	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0174	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0175	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0176	1	0	0	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0177	1	1	0	0	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0178	1	0	0	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0179	1	0	0	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0180	1	0	0	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0181	1	0	0	1	0	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0182	1	0	0	0	1	0	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	g0183	1	0	0	0	1	0	VDAC2	chr10	75205796	75236448
VDAC3_chr8_42386880_42410937	1/1	g0001	85	18	9	43	0	13	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	g0002	22	13	0	8	0	1	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	g0003	15	1	0	11	0	3	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	g0004	14	4	1	4	1	4	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	g0005	14	13	1	0	0	0	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	g0006	12	0	0	12	0	0	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	g0007	6	0	0	6	0	0	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	g0008	4	1	3	0	0	0	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	g0009	4	4	0	0	0	0	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	g0010	4	0	1	3	0	0	VDAC3	chr8	42386880	42410937