JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VDR_chr12_47836537_47909994	0/0	g0317	1	0	1	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0318	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0319	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0320	1	0	0	0	0	1	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0321	1	0	1	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0322	1	0	1	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0323	1	0	1	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0324	1	0	0	0	0	1	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0325	1	0	1	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0326	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0327	1	0	1	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0328	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0329	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0330	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0331	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0332	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0333	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0334	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0335	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0336	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0337	1	0	1	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0338	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0339	1	0	1	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0340	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0341	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0342	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0343	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0344	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0345	1	0	1	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0346	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0347	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0348	1	0	0	1	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0349	1	0	0	0	0	1	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0350	1	0	1	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0351	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0352	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0353	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0354	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0355	1	1	0	0	0	0	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	g0356	1	0	0	1	0	0	VDR	chr12	47836537	47909994
VEGFA_chr6_43765211_43791487	0/0	g0001	30	0	6	18	3	3	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	g0002	19	1	14	3	1	0	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	g0003	16	0	9	5	1	1	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	g0004	15	0	2	3	2	8	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	g0005	12	10	1	1	0	0	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	g0006	11	0	0	11	0	0	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	g0007	11	0	3	6	1	1	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	g0008	10	1	6	3	0	0	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	g0009	10	3	0	6	0	1	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	g0010	8	0	0	8	0	0	VEGFA	chr6	43765211	43791487