JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VEGFA_chr6_43765211_43791487	0/0	g0211	1	0	0	1	0	0	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	g0212	1	0	0	0	0	1	VEGFA	chr6	43765211	43791487
VEGFB_chr11_64229584_64244264	0/0	g0001	25	1	12	11	0	1	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0002	19	1	6	5	0	7	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0003	19	3	11	3	1	1	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0004	18	2	4	9	1	2	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0005	15	14	1	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0006	11	1	6	0	1	3	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0007	4	4	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0008	4	1	2	1	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0009	4	4	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0010	4	2	2	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0011	4	1	2	1	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0012	4	1	0	3	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0013	4	0	0	0	2	2	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0014	4	0	0	4	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0015	4	0	0	4	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0016	4	1	3	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0017	3	2	1	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0018	3	2	1	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0019	3	0	0	3	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0020	3	3	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0021	3	3	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0022	3	3	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0023	3	3	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0024	2	0	0	2	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0025	2	2	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0026	2	0	1	1	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0027	2	0	2	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0028	2	0	0	2	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0029	2	2	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0030	2	1	0	0	0	1	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0031	2	2	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0032	2	2	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0033	2	0	2	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0034	2	1	1	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0035	2	0	0	2	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0036	2	1	1	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0037	1	1	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0038	1	0	0	1	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0039	1	0	0	1	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0040	1	0	0	0	0	1	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0041	1	0	0	1	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0042	1	0	0	1	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0043	1	0	0	1	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0044	1	1	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0045	1	1	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0046	1	1	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	g0047	1	1	0	0	0	0	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	1/0	g0048	1	0	0	0	0	0	VEGFB	chr11	64229584	64244264