JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BORCS8_chr19_19171906_19197152	0/0	g0310	1	0	0	0	0	1	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0311	1	0	0	1	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0312	1	0	0	0	0	1	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0313	1	1	0	0	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0314	1	0	0	1	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0315	1	0	0	1	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0316	1	0	0	0	0	1	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0317	1	0	0	0	0	1	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0318	1	0	0	1	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0319	1	0	0	1	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0320	1	1	0	0	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0321	1	0	0	1	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0322	1	0	0	0	0	1	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0323	1	0	0	1	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0324	1	0	0	1	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0325	1	0	0	1	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0326	1	1	0	0	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0327	1	0	1	0	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0328	1	1	0	0	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0329	1	1	0	0	0	0	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	g0330	1	1	0	0	0	0	BORCS8	chr19	19171906	19197152
BPGM_chr7_134641853_134684816	0/1	g0001	49	1	7	30	1	9	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0002	18	0	0	18	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0003	12	0	4	6	0	2	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0004	7	1	3	0	2	1	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0005	6	1	0	4	0	1	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0006	6	3	0	0	0	3	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0007	6	0	2	2	1	1	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0008	5	5	0	0	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0009	5	0	5	0	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0010	5	0	0	5	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0011	5	1	3	0	1	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0012	4	1	2	0	1	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0013	4	1	0	3	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0014	4	4	0	0	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0015	4	1	0	3	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0016	4	0	2	2	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0017	4	0	2	2	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0018	3	1	0	0	1	1	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0019	3	0	2	0	0	1	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0020	3	3	0	0	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0021	3	3	0	0	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0022	3	3	0	0	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0023	3	0	0	3	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0024	3	0	3	0	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0025	3	0	0	3	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0026	2	2	0	0	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0027	2	0	0	2	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0028	2	0	0	2	0	0	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	g0029	2	1	1	0	0	0	BPGM	chr7	134641853	134684816