JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VGLL1_chrX_136527215_136561799	0/0	g0146	1	0	0	1	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0147	1	0	0	1	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0148	1	0	0	1	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0149	1	0	1	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0150	1	0	1	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0151	1	0	0	0	0	1	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0152	1	1	0	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0153	1	0	0	1	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0154	1	0	1	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0155	1	0	1	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0156	1	0	0	1	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0157	1	0	0	1	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0158	1	0	0	1	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0159	1	0	0	0	1	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0160	1	1	0	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0161	1	1	0	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0162	1	1	0	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0163	1	0	0	1	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0164	1	0	0	0	0	1	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0165	1	1	0	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0166	1	1	0	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0167	1	1	0	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0168	1	0	0	1	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0169	1	0	1	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0170	1	1	0	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0171	1	0	0	1	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0172	1	0	0	1	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0173	1	1	0	0	0	0	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	g0174	1	1	0	0	0	0	VGLL1	chrX	136527215	136561799
VGLL2_chr6_117260558_117278565	1/0	g0001	113	6	22	65	2	17	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0002	53	3	4	34	2	10	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0003	26	4	7	14	0	1	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0004	25	7	9	0	4	5	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0005	23	0	2	18	1	2	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0006	23	3	0	19	0	1	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0007	21	3	2	15	0	1	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0008	20	6	3	6	5	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0009	10	10	0	0	0	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/1	g0010	8	0	2	0	2	3	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0011	8	0	4	4	0	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0012	7	7	0	0	0	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0013	5	0	0	5	0	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0014	5	0	4	0	1	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0015	4	4	0	0	0	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0016	4	4	0	0	0	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0017	4	0	1	3	0	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0018	4	4	0	0	0	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0019	3	2	1	0	0	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0020	3	3	0	0	0	0	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	g0021	3	3	0	0	0	0	VGLL2	chr6	117260558	117278565