JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VGLL4_chr3_11551069_11648915	0/0	g0350	1	0	1	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0351	1	0	0	0	1	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0352	1	0	0	0	1	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0353	1	1	0	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0354	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0355	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0356	1	1	0	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0357	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0358	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0359	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0360	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0361	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0362	1	0	1	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0363	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0364	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0365	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0366	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0367	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0368	1	0	1	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0369	1	0	0	0	1	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0370	1	0	0	0	0	1	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0371	1	0	1	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0372	1	0	1	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0373	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0374	1	1	0	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0375	1	1	0	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0376	1	1	0	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0377	1	0	0	0	0	1	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0378	1	0	0	0	0	1	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0379	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0380	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0381	1	0	0	0	0	1	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0382	1	1	0	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0383	1	0	1	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0384	1	0	0	1	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0385	1	0	1	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0386	1	1	0	0	0	0	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	g0387	1	1	0	0	0	0	VGLL4	chr3	11551069	11648915
VHLL_chr1_156293624_156304307	1/1	g0000	388	84	70	178	16	38	VHLL	chr1	156293624	156304307
VHL_chr3_10136778_10158667	0/0	g0001	67	2	19	37	3	6	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	g0002	33	0	9	19	2	3	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	g0003	16	16	0	0	0	0	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	g0004	13	2	4	3	2	2	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	g0005	13	0	0	12	0	1	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	g0006	11	0	7	0	3	1	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	g0007	10	0	1	9	0	0	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	g0008	9	2	5	0	2	0	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	g0009	9	9	0	0	0	0	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	g0010	9	0	2	5	0	2	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	g0011	7	0	4	0	0	3	VHL	chr3	10136778	10158667