JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VIPR2_chr7_159023175_159149867	0/0	g0327	1	1	0	0	0	0	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	g0328	1	1	0	0	0	0	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	g0329	1	1	0	0	0	0	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	g0330	1	0	1	0	0	0	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	g0331	1	1	0	0	0	0	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	g0332	1	1	0	0	0	0	VIPR2	chr7	159023175	159149867
VIP_chr6_152745797_152764760	1/0	g0001	221	21	42	118	12	27	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0002	51	12	4	27	1	7	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0003	38	2	11	20	2	3	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0004	11	10	1	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0005	8	0	0	8	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0006	8	0	7	0	0	1	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0007	6	4	1	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0008	6	1	2	2	0	1	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0009	6	6	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/1	g0010	4	0	2	0	1	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0011	4	4	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0012	3	3	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0013	3	3	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0014	3	1	2	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0015	2	2	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0016	2	2	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0017	2	2	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0018	2	0	0	2	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0019	2	2	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0020	2	2	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0021	2	0	0	2	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0022	2	2	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0023	2	2	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0024	2	2	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0025	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0026	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0027	1	0	1	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0028	1	0	0	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0029	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0030	1	0	0	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0031	1	0	0	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0032	1	0	1	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0033	1	0	0	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0034	1	0	0	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0035	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0036	1	0	0	0	0	1	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0037	1	0	0	0	1	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0038	1	0	1	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0039	1	0	0	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0040	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0041	1	0	1	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0042	1	0	0	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0043	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0044	1	0	0	1	0	0	VIP	chr6	152745797	152764760