JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VIP_chr6_152745797_152764760	0/0	g0045	1	0	0	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0046	1	0	0	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0047	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0048	1	0	0	0	0	1	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0049	1	0	0	0	0	1	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0050	1	0	0	0	1	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0051	1	0	1	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0052	1	0	1	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0053	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0054	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0055	1	0	0	0	0	1	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0056	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0057	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0058	1	0	0	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0059	1	0	0	1	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0060	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0061	1	0	1	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0062	1	1	0	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0063	1	0	1	0	0	0	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	g0064	1	0	0	0	0	1	VIP	chr6	152745797	152764760
VIRMA_chr8_94482689_94558469	0/0	g0001	6	0	1	5	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0002	3	0	1	2	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0003	3	0	2	0	0	1	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0004	3	0	0	2	0	1	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0005	3	0	0	3	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0006	3	0	0	2	0	1	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0007	2	2	0	0	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0008	2	0	0	2	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0009	2	0	0	2	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0010	2	0	0	2	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0011	2	0	1	1	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0012	2	0	0	2	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0013	2	0	0	0	2	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0014	2	0	0	0	1	1	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0015	2	0	0	0	2	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0016	2	0	0	2	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0017	2	0	2	0	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0018	2	0	0	0	0	2	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0019	2	0	1	0	0	1	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0020	2	0	0	1	0	1	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0021	2	1	1	0	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0022	2	2	0	0	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0023	2	2	0	0	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0024	2	2	0	0	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0025	2	2	0	0	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0026	1	0	1	0	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0027	1	0	1	0	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0028	1	0	0	0	0	1	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0029	1	0	1	0	0	0	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	g0030	1	0	0	0	1	0	VIRMA	chr8	94482689	94558469