JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BPHL_chr6_3113711_3158578	0/0	g0239	1	0	0	1	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0240	1	0	0	0	0	1	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0241	1	0	1	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0242	1	0	0	0	0	1	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0243	1	0	0	1	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0244	1	0	1	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0245	1	0	1	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0246	1	1	0	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0247	1	0	0	1	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0248	1	1	0	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0249	1	0	1	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0250	1	0	0	1	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0251	1	0	1	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0252	1	0	0	1	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0253	1	0	0	0	0	1	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0254	1	0	0	1	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0255	1	0	0	1	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0256	1	0	0	1	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0257	1	0	0	0	0	1	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0258	1	0	1	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0259	1	0	0	1	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0260	1	1	0	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0261	1	0	1	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0262	1	1	0	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0263	1	1	0	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0264	1	0	1	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0265	1	1	0	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0266	1	1	0	0	0	0	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	g0267	1	0	0	1	0	0	BPHL	chr6	3113711	3158578
BPIFA1_chr20_33230996_33248306	0/0	g0001	21	0	4	16	1	0	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0002	19	2	3	11	0	3	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0003	18	0	3	12	0	3	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0004	15	3	4	7	0	1	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0005	12	2	0	8	0	2	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0006	11	11	0	0	0	0	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0007	10	1	1	6	1	1	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0008	10	0	1	7	0	2	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/1	g0009	9	0	0	4	1	3	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0010	8	1	3	2	0	2	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0011	6	0	0	6	0	0	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0012	6	1	1	1	2	1	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0013	6	3	3	0	0	0	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0014	6	0	0	6	0	0	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0015	5	0	1	4	0	0	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0016	5	0	1	4	0	0	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0017	5	1	0	4	0	0	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0018	5	0	1	4	0	0	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0019	5	1	1	1	1	1	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0020	4	0	4	0	0	0	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	g0021	4	3	1	0	0	0	BPIFA1	chr20	33230996	33248306