JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VMA21_chrX_151392206_151414364	0/0	g0052	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0053	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0054	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0055	1	0	0	0	0	1	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0056	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0057	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0058	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0059	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0060	1	0	1	0	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0061	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	1/0	g0062	1	0	0	0	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0063	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0064	1	0	1	0	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0065	1	0	0	0	1	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0066	1	0	1	0	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0067	1	0	0	0	0	1	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0068	1	1	0	0	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0069	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0070	1	0	0	0	0	1	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0071	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0072	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0073	1	1	0	0	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0074	1	1	0	0	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0075	1	1	0	0	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0076	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0077	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0078	1	1	0	0	0	0	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	g0079	1	0	0	1	0	0	VMA21	chrX	151392206	151414364
VMAC_chr19_5899872_5915853	0/0	g0001	46	1	5	33	0	7	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0002	33	3	6	19	0	5	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0003	33	1	1	24	1	6	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0004	25	9	2	10	0	4	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0005	16	1	0	15	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0006	15	6	4	3	0	2	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0007	10	1	2	5	0	2	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0008	8	0	4	0	1	3	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0009	8	3	0	5	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0010	8	8	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0011	7	2	2	1	0	2	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/1	g0012	7	1	1	1	1	2	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0013	6	6	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0014	5	0	4	1	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0015	5	0	3	2	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0016	5	1	0	1	0	3	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0017	5	1	3	0	0	1	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0018	5	4	1	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0019	4	0	2	0	1	1	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0020	4	0	0	4	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0021	4	0	2	0	0	2	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0022	4	0	0	4	0	0	VMAC	chr19	5899872	5915853