JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VMAC_chr19_5899872_5915853	0/0	g0073	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0074	1	0	0	0	0	1	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0075	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0076	1	0	0	1	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0077	1	0	1	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0078	1	0	1	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0079	1	0	1	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0080	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0081	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0082	1	0	0	1	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0083	1	0	1	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0084	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0085	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0086	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0087	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0088	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0089	1	0	1	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0090	1	0	1	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0091	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0092	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0093	1	0	0	1	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0094	1	0	1	0	0	0	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0095	1	0	0	0	0	1	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0096	1	0	0	0	0	1	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	g0097	1	1	0	0	0	0	VMAC	chr19	5899872	5915853
VMO1_chr17_4780285_4791364	0/0	g0001	219	54	37	110	7	11	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/1	g0002	141	2	32	74	7	25	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	g0003	45	4	10	25	4	2	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	g0004	19	19	0	0	0	0	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	1/0	g0005	6	4	1	0	0	0	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	g0006	3	3	0	0	0	0	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	g0007	3	0	0	0	0	3	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	g0008	2	2	0	0	0	0	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	g0009	2	2	0	0	0	0	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	g0010	1	0	0	0	0	1	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	g0011	1	0	0	1	0	0	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	g0012	1	0	0	0	0	1	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	g0013	1	0	0	0	0	1	VMO1	chr17	4780285	4791364
VMP1_chr17_59702654_59847255	0/0	g0001	1	0	0	1	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0002	1	0	0	0	0	1	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0003	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0004	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0005	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0006	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0007	1	0	1	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0008	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0009	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0010	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0011	1	0	1	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0012	1	0	0	0	0	1	VMP1	chr17	59702654	59847255