JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VMP1_chr17_59702654_59847255	0/0	g0263	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0264	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0265	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0266	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0267	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0268	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0269	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0270	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0271	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0272	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0273	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0274	1	0	0	0	0	1	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0275	1	0	0	0	0	1	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0276	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0277	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0278	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0279	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0280	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0281	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0282	1	0	1	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0283	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0284	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0285	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	g0286	1	1	0	0	0	0	VMP1	chr17	59702654	59847255
VN1R1_chr19_57449790_57462140	1/1	g0000	430	94	72	202	14	46	VN1R1	chr19	57449790	57462140
VN1R2_chr19_53253292_53264602	1/1	g0000	458	94	86	214	14	48	VN1R2	chr19	53253292	53264602
VN1R4_chr19_53261676_53272723	1/1	g0000	456	92	80	220	14	48	VN1R4	chr19	53261676	53272723
VNN1_chr6_132675849_132719055	0/0	g0001	43	0	4	36	1	2	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0002	27	5	5	14	0	3	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0003	13	0	3	7	1	2	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0004	12	0	0	11	1	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	1/0	g0005	12	0	4	4	1	2	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0006	12	0	2	9	0	1	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0007	11	0	7	0	2	2	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0008	7	0	0	7	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0009	5	0	4	0	0	1	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0010	5	5	0	0	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0011	5	5	0	0	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0012	4	0	4	0	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0013	4	0	0	4	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0014	4	0	3	0	1	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0015	4	0	2	2	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0016	4	0	0	4	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0017	4	4	0	0	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0018	4	0	0	4	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0019	3	0	1	2	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0020	3	0	3	0	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0021	3	0	0	3	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0022	3	1	2	0	0	0	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	g0023	3	1	0	0	0	2	VNN1	chr6	132675849	132719055