JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VOPP1_chr7_55465613_55577502	0/0	g0284	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0285	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0286	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0287	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0288	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0289	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0290	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0291	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0292	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0293	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0294	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0295	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0296	1	0	1	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0297	1	0	1	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0298	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0299	1	0	1	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0300	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0301	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0302	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0303	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0304	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0305	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0306	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0307	1	0	1	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0308	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0309	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	1/0	g0310	1	0	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0311	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0312	1	0	0	0	0	1	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0313	1	0	0	0	0	1	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0314	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0315	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0316	1	1	0	0	0	0	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	g0317	1	0	0	1	0	0	VOPP1	chr7	55465613	55577502
VPREB1_chr22_22239786_22250515	1/1	g0001	440	94	78	204	14	48	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	g0002	4	4	0	0	0	0	VPREB1	chr22	22239786	22250515
VPREB3_chr22_23747743_23759425	1/1	g0001	135	9	42	49	7	26	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0002	99	1	7	78	2	11	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0003	72	13	10	46	2	1	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0004	36	33	2	0	1	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0005	25	6	11	5	3	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0006	18	16	2	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0007	10	0	0	5	0	5	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0008	6	6	0	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0009	4	2	2	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0010	2	0	2	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0011	2	2	0	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0012	2	0	0	2	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0013	2	0	0	2	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0014	2	2	0	0	0	0	VPREB3	chr22	23747743	23759425