JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VPREB3_chr22_23747743_23759425	0/0	g0015	2	2	0	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0016	1	0	0	0	1	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0017	1	1	0	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0018	1	0	1	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0019	1	0	0	0	0	1	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0020	1	1	0	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0021	1	0	0	0	0	1	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0022	1	0	0	1	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0023	1	0	0	1	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0024	1	0	1	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0025	1	0	0	0	0	1	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0026	1	1	0	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0027	1	1	0	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0028	1	0	0	1	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0029	1	0	0	1	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0030	1	1	0	0	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0031	1	0	0	1	0	0	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	g0032	1	1	0	0	0	0	VPREB3	chr22	23747743	23759425
VPS11_chr11_119062818_119086972	0/0	g0001	16	0	1	12	0	3	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0002	15	2	9	3	0	1	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/1	g0003	14	7	3	2	1	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0004	10	0	0	9	0	1	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0005	9	0	4	5	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0006	9	3	5	1	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0007	8	0	2	6	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0008	6	0	3	0	3	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0009	5	2	3	0	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0010	5	4	0	0	1	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0011	5	5	0	0	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0012	5	2	1	2	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0013	4	4	0	0	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0014	4	0	0	4	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0015	4	0	3	1	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0016	4	4	0	0	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0017	4	0	1	1	0	2	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0018	3	0	1	1	0	1	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0019	3	0	0	2	1	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0020	3	0	0	3	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0021	3	0	0	0	0	3	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0022	3	3	0	0	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0023	3	3	0	0	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0024	3	0	1	2	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0025	3	0	1	0	1	1	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0026	3	1	0	1	0	1	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0027	3	0	0	2	0	1	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0028	3	0	3	0	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0029	3	0	1	0	1	1	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0030	3	0	2	1	0	0	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0031	3	0	0	1	1	1	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	g0032	2	0	0	2	0	0	VPS11	chr11	119062818	119086972