JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VPS16_chr20_2835745_2871732	0/0	g0352	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0353	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0354	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0355	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0356	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0357	1	0	0	1	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0358	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0359	1	0	0	0	0	1	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0360	1	0	0	0	0	1	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0361	1	0	0	0	0	1	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0362	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0363	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0364	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0365	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0366	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	g0367	1	1	0	0	0	0	VPS16	chr20	2835745	2871732
VPS18_chr15_40889450_40908975	0/1	g0001	125	5	28	68	5	18	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0002	31	2	6	16	0	7	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0003	24	6	7	2	5	4	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0004	20	0	1	19	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0005	13	4	0	8	0	1	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0006	12	0	0	12	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0007	11	10	1	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0008	10	1	6	0	1	2	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0009	9	8	1	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0010	8	1	1	4	0	2	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0011	7	0	0	7	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0012	6	0	0	4	0	2	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0013	5	4	1	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0014	5	0	5	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0015	5	4	0	1	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0016	5	5	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0017	4	0	0	4	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0018	4	0	3	0	0	1	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0019	3	3	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0020	3	0	0	3	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0021	3	3	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0022	3	3	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0023	3	3	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0024	2	2	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0025	2	0	0	2	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0026	2	0	1	0	1	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0027	2	0	1	1	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0028	2	2	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0029	2	2	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0030	2	2	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0031	2	2	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0032	2	0	0	2	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0033	2	0	0	2	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0034	2	0	0	2	0	0	VPS18	chr15	40889450	40908975