JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VPS18_chr15_40889450_40908975	0/0	g0085	1	0	0	1	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0086	1	0	0	1	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0087	1	0	0	1	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0088	1	1	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0089	1	1	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0090	1	0	0	1	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0091	1	0	0	0	0	1	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0092	1	1	0	0	0	0	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0093	1	0	0	0	0	1	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	g0094	1	1	0	0	0	0	VPS18	chr15	40889450	40908975
VPS25_chr17_42768449_42784599	1/1	g0001	124	14	28	48	11	21	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0002	55	24	12	14	0	5	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0003	12	1	9	0	2	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0004	10	0	0	7	0	3	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0005	10	0	3	5	1	1	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0006	9	8	1	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0007	6	6	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0008	6	0	0	6	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0009	4	3	0	0	0	1	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0010	4	2	1	1	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0011	4	4	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0012	4	0	0	4	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0013	4	4	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0014	3	3	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0015	3	0	0	0	0	3	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0016	3	2	1	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0017	2	2	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0018	2	2	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0019	2	2	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0020	2	2	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0021	2	0	1	0	0	1	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0022	2	0	1	1	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0023	2	0	0	0	0	2	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0024	1	1	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0025	1	1	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0026	1	1	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0027	1	0	0	0	0	1	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0028	1	1	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0029	1	1	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0030	1	1	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0031	1	1	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0032	1	1	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0033	1	0	1	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0034	1	0	0	1	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0035	1	0	0	1	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0036	1	0	0	1	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0037	1	1	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0038	1	1	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0039	1	1	0	0	0	0	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	g0040	1	0	0	1	0	0	VPS25	chr17	42768449	42784599