JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VPS26A_chr10_69119178_69179412	0/0	g0299	1	0	1	0	0	0	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	g0300	1	0	1	0	0	0	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	g0301	1	1	0	0	0	0	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	g0302	1	1	0	0	0	0	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	g0303	1	0	0	1	0	0	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	g0304	1	0	0	1	0	0	VPS26A	chr10	69119178	69179412
VPS26B_chr11_134219671_134252788	1/0	g0001	42	1	0	36	0	4	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0002	33	6	4	17	3	3	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0003	31	5	8	14	1	3	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0004	21	0	1	20	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0005	11	0	4	6	0	1	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0006	9	0	9	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0007	6	5	1	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0008	6	0	0	6	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0009	6	0	1	4	0	1	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0010	5	5	0	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0011	5	0	0	4	0	1	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0012	5	0	0	5	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0013	5	0	0	5	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0014	4	1	3	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0015	4	4	0	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0016	4	4	0	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0017	4	0	0	4	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0018	4	0	4	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0019	4	4	0	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0020	4	0	3	0	1	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0021	4	0	0	1	0	3	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0022	3	3	0	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0023	3	3	0	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0024	3	0	0	3	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0025	3	0	2	0	1	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0026	3	3	0	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0027	3	0	0	0	0	3	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0028	3	0	2	1	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0029	3	0	0	2	0	1	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0030	3	1	0	0	1	1	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0031	3	0	3	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0032	2	2	0	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0033	2	0	0	2	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0034	2	1	1	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0035	2	2	0	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0036	2	2	0	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0037	2	2	0	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0038	2	1	1	0	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0039	2	0	1	0	1	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0040	2	0	0	2	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0041	2	0	0	2	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0042	2	0	0	2	0	0	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0043	2	0	0	0	1	1	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	g0044	2	2	0	0	0	0	VPS26B	chr11	134219671	134252788