JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VPS36_chr13_52407606_52455634	0/0	g0257	1	0	0	1	0	0	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0258	1	0	0	1	0	0	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0259	1	0	0	1	0	0	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0260	1	0	0	0	0	1	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0261	1	0	0	0	0	1	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0262	1	0	0	1	0	0	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0263	1	0	0	1	0	0	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0264	1	0	0	1	0	0	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0265	1	0	1	0	0	0	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0266	1	0	1	0	0	0	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0267	1	0	1	0	0	0	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0268	1	0	1	0	0	0	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0269	1	0	0	1	0	0	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	g0270	1	1	0	0	0	0	VPS36	chr13	52407606	52455634
VPS37A_chr8_17241958_17303024	0/0	g0001	6	0	3	1	2	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0002	6	0	3	3	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0003	4	0	0	4	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0004	4	4	0	0	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0005	4	0	0	4	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0006	4	0	2	2	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0007	3	0	0	0	1	2	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0008	3	0	0	3	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0009	3	0	3	0	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0010	2	0	0	2	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0011	2	0	2	0	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0012	2	0	2	0	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0013	2	0	0	0	0	2	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0014	2	1	1	0	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0015	2	0	0	2	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0016	2	0	2	0	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/1	g0017	2	0	0	0	0	1	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0018	2	0	0	2	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0019	2	0	0	0	1	1	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0020	2	0	0	2	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0021	2	0	0	2	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0022	2	0	2	0	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0023	2	0	0	2	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0024	2	0	0	2	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0025	2	2	0	0	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0026	2	0	2	0	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0027	2	1	1	0	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0028	2	0	0	2	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0029	2	0	0	2	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0030	2	2	0	0	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0031	1	0	0	1	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0032	1	0	0	1	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0033	1	0	0	1	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0034	1	0	0	1	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0035	1	0	0	1	0	0	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	g0036	1	0	0	1	0	0	VPS37A	chr8	17241958	17303024