JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VPS4A_chr16_69306350_69331939	0/0	g0199	1	0	0	1	0	0	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	g0200	1	0	0	1	0	0	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	g0201	1	0	0	1	0	0	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	g0202	1	0	0	1	0	0	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	g0203	1	0	0	0	0	1	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	g0204	1	0	0	0	0	1	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	g0205	1	0	0	0	0	1	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	g0206	1	0	0	0	0	1	VPS4A	chr16	69306350	69331939
VPS4B_chr18_63384190_63427476	0/0	g0001	46	2	10	30	1	3	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0002	41	5	7	22	0	7	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	1/0	g0003	11	0	3	2	0	5	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0004	11	5	2	2	1	1	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0005	10	10	0	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0006	10	0	5	4	1	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0007	7	1	2	4	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0008	7	0	0	7	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0009	6	0	6	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0010	6	0	0	5	0	1	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0011	5	0	2	0	0	3	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0012	5	0	0	5	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0013	4	4	0	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0014	3	3	0	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0015	3	2	0	0	0	1	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0016	3	0	0	0	1	2	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0017	3	2	1	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0018	3	0	0	3	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0019	2	2	0	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0020	2	2	0	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0021	2	2	0	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0022	2	0	1	0	1	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0023	2	0	0	2	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0024	2	2	0	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0025	2	0	1	0	1	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0026	2	0	0	2	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0027	2	0	0	0	2	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/1	g0028	2	0	0	0	0	1	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0029	2	0	0	2	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0030	2	0	0	2	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0031	2	0	2	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0032	2	0	0	2	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0033	2	2	0	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0034	2	0	0	2	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0035	2	0	0	2	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0036	2	2	0	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0037	2	0	2	0	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0038	2	0	0	2	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0039	2	0	0	2	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0040	2	0	0	2	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0041	2	0	0	2	0	0	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	g0042	2	0	0	1	0	1	VPS4B	chr18	63384190	63427476