JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VPS50_chr7_93227366_93366123	0/0	g0298	1	1	0	0	0	0	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	g0299	1	1	0	0	0	0	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	g0300	1	1	0	0	0	0	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	g0301	1	1	0	0	0	0	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	g0302	1	1	0	0	0	0	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	g0303	1	1	0	0	0	0	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	g0304	1	0	1	0	0	0	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	g0305	1	1	0	0	0	0	VPS50	chr7	93227366	93366123
VPS51_chr11_65091214_65116862	0/0	g0001	37	5	9	17	2	4	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/1	g0002	26	1	12	9	1	2	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0003	24	6	6	5	1	6	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0004	17	7	3	5	0	2	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0005	13	3	3	2	2	3	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0006	11	10	1	0	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0007	6	2	0	4	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0008	6	0	0	6	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0009	5	0	0	5	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0010	5	3	2	0	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0011	5	0	0	5	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0012	4	4	0	0	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0013	4	4	0	0	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0014	4	0	1	1	1	1	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0015	4	4	0	0	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0016	4	0	1	2	0	1	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0017	4	0	3	1	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0018	4	0	2	1	1	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0019	4	0	1	1	2	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0020	3	0	1	1	0	1	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0021	3	1	2	0	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0022	3	0	0	2	0	1	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0023	3	0	0	1	0	2	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0024	3	0	0	3	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0025	3	0	2	1	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0026	2	0	0	2	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0027	2	0	0	2	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0028	2	1	0	1	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0029	2	0	0	2	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0030	2	0	0	2	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0031	2	0	0	2	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0032	2	0	0	2	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0033	2	2	0	0	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0034	2	2	0	0	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0035	2	0	0	2	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0036	2	0	1	0	0	1	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0037	2	2	0	0	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0038	2	1	1	0	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0039	2	0	2	0	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0040	2	0	0	2	0	0	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0041	2	0	0	1	0	1	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	g0042	2	0	0	2	0	0	VPS51	chr11	65091214	65116862