JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VPS54_chr2_63887150_64024428	0/0	g0270	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0271	1	0	0	0	0	1	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0272	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0273	1	0	1	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0274	1	0	0	1	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0275	1	0	0	0	0	1	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0276	1	0	1	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0277	1	0	0	1	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0278	1	0	1	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0279	1	0	1	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0280	1	0	1	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0281	1	0	1	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0282	1	0	0	1	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0283	1	0	0	0	0	1	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0284	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0285	1	0	0	0	0	1	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0286	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0287	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0288	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0289	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0290	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0291	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0292	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0293	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0294	1	0	0	1	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0295	1	0	0	0	0	1	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0296	1	0	1	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0297	1	0	0	0	1	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0298	1	0	1	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0299	1	0	0	0	0	1	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0300	1	0	0	0	0	1	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0301	1	0	0	0	0	1	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0302	1	0	0	0	0	1	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0303	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	g0304	1	1	0	0	0	0	VPS54	chr2	63887150	64024428
VPS72_chr1_151171304_151195197	0/1	g0001	76	10	11	36	5	13	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0002	42	4	10	18	0	10	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0003	37	10	6	13	5	3	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0004	15	0	2	13	0	0	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0005	9	0	0	6	0	3	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0006	9	0	2	6	0	1	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0007	9	0	5	4	0	0	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0008	9	1	5	0	0	3	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	1/0	g0009	8	7	0	0	0	0	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0010	6	0	0	6	0	0	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0011	6	1	2	3	0	0	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0012	6	0	0	6	0	0	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0013	5	0	0	5	0	0	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0014	4	4	0	0	0	0	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	g0015	4	4	0	0	0	0	VPS72	chr1	151171304	151195197