JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VRK3_chr19_49971468_50030372	0/0	g0309	1	0	0	1	0	0	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0310	1	0	0	1	0	0	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0311	1	0	0	1	0	0	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0312	1	0	0	0	0	1	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0313	1	0	0	0	0	1	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0314	1	0	0	1	0	0	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0315	1	0	0	1	0	0	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0316	1	0	0	1	0	0	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0317	1	0	0	1	0	0	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0318	1	0	0	1	0	0	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0319	1	0	0	1	0	0	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0320	1	0	0	0	0	1	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	g0321	1	0	0	0	1	0	VRK3	chr19	49971468	50030372
VRTN_chr14_74343471_74365008	0/1	g0001	89	1	21	42	4	20	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0002	35	2	5	17	3	8	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0003	27	0	0	26	0	1	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0004	23	1	12	3	3	4	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0005	17	0	0	15	0	2	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0006	12	0	8	2	1	1	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0007	11	9	2	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0008	10	0	2	7	0	1	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0009	10	10	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0010	9	0	0	9	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0011	9	7	2	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0012	7	0	0	7	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0013	7	0	3	2	1	1	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0014	6	1	2	2	0	1	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0015	5	0	0	5	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0016	5	0	3	0	2	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0017	4	4	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0018	4	0	0	4	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0019	4	0	0	4	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0020	4	0	1	2	0	1	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0021	4	4	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0022	4	4	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0023	4	4	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0024	4	0	0	2	0	2	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0025	4	0	0	4	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0026	3	0	0	3	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0027	3	0	0	3	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0028	3	2	0	0	0	1	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0029	3	0	0	3	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0030	3	0	0	2	0	1	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0031	3	2	1	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0032	3	0	0	3	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0033	3	0	1	0	1	1	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0034	2	2	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0035	2	1	0	1	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0036	2	0	2	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0037	2	2	0	0	0	0	VRTN	chr14	74343471	74365008