JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VRTN_chr14_74343471_74365008	0/0	g0088	1	1	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0089	1	1	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0090	1	1	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0091	1	1	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0092	1	1	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0093	1	0	0	1	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0094	1	1	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0095	1	1	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0096	1	0	1	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0097	1	0	0	1	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0098	1	1	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0099	1	1	0	0	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0100	1	0	0	1	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0101	1	0	0	0	0	1	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0102	1	0	0	1	0	0	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	g0103	1	0	1	0	0	0	VRTN	chr14	74343471	74365008
VSIG10L2_chr11_125941044_125961319	0/0	g0001	99	11	12	67	2	7	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0002	60	2	13	38	2	5	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0003	51	16	11	12	3	9	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0004	40	1	7	29	0	3	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0005	19	0	1	16	0	2	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0006	11	1	4	0	1	5	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0007	10	6	2	0	0	2	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0008	9	8	1	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0009	8	0	8	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	1/0	g0010	7	0	4	0	1	1	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0011	7	7	0	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0012	7	7	0	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0013	7	0	0	7	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0014	5	0	1	2	2	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0015	5	0	1	4	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0016	4	0	4	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0017	4	0	0	4	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0018	4	0	0	4	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0019	3	0	0	0	0	3	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0020	3	3	0	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0021	3	3	0	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0022	3	3	0	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0023	2	0	0	2	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0024	2	2	0	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0025	2	0	0	0	0	2	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0026	2	2	0	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0027	2	0	0	2	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0028	2	0	0	2	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0029	2	2	0	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0030	2	2	0	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0031	2	1	1	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0032	2	2	0	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0033	2	0	2	0	0	0	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	g0034	2	0	1	0	0	1	VSIG10L2	chr11	125941044	125961319