JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VSIG10L_chr19_51326541_51347139	0/1	g0001	60	3	18	27	7	4	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0002	48	2	10	34	0	2	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0003	47	5	6	28	2	6	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0004	35	0	6	16	0	13	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0005	20	5	5	7	2	1	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0006	16	1	1	11	0	3	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0007	13	13	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0008	11	0	1	10	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0009	11	0	1	9	0	1	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0010	11	10	1	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0011	10	0	0	9	0	1	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0012	7	0	5	0	1	1	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0013	7	7	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0014	6	0	1	3	0	2	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0015	5	0	0	5	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0016	5	5	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0017	5	0	2	3	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0018	5	4	0	0	1	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0019	5	0	2	0	1	2	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0020	5	0	1	0	1	3	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0021	4	0	0	4	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0022	4	3	1	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0023	4	0	2	0	0	2	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0024	3	3	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0025	3	0	0	3	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0026	3	0	0	3	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0027	3	3	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0028	3	3	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0029	3	3	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0030	2	1	1	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0031	2	2	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0032	2	2	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0033	2	0	0	2	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0034	2	0	1	1	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0035	2	0	2	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0036	2	0	0	2	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0037	2	0	0	2	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0038	2	0	2	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0039	2	2	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0040	2	2	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0041	1	0	1	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0042	1	0	0	1	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0043	1	0	0	1	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0044	1	0	0	1	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0045	1	0	0	1	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0046	1	0	0	1	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0047	1	0	0	1	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0048	1	0	0	1	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0049	1	1	0	0	0	0	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	g0050	1	0	0	1	0	0	VSIG10L	chr19	51326541	51347139