JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VSIG10_chr12_118058593_118109011	0/0	g0393	1	1	0	0	0	0	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	g0394	1	1	0	0	0	0	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	g0395	1	1	0	0	0	0	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	g0396	1	1	0	0	0	0	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	g0397	1	1	0	0	0	0	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	g0398	1	1	0	0	0	0	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	g0399	1	1	0	0	0	0	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	g0400	1	0	1	0	0	0	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	g0401	1	0	0	1	0	0	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	g0402	1	0	0	0	0	1	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	g0403	1	0	0	0	1	0	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	g0404	1	1	0	0	0	0	VSIG10	chr12	118058593	118109011
VSIG1_chrX_108040065_108084184	0/0	g0001	6	0	0	6	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0002	5	0	1	3	1	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0003	5	0	0	5	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0004	4	0	0	4	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/1	g0005	3	0	0	0	0	2	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0006	3	0	2	0	0	1	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0007	3	0	0	3	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0008	3	3	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0009	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0010	2	0	2	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0011	2	2	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0012	2	1	1	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0013	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0014	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0015	2	0	2	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0016	2	0	2	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0017	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0018	2	0	2	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0019	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0020	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0021	2	2	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0022	2	0	2	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0023	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0024	2	1	1	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0025	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0026	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0027	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0028	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0029	2	2	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0030	2	0	0	0	2	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0031	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0032	2	0	0	2	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0033	2	0	0	0	0	2	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0034	2	0	2	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0035	2	0	1	0	1	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0036	2	2	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0037	1	0	1	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0038	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184