JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VSIG1_chrX_108040065_108084184	0/0	g0189	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0190	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0191	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0192	1	0	0	0	1	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0193	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0194	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0195	1	0	0	1	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0196	1	0	0	0	0	1	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0197	1	0	0	0	0	1	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0198	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0199	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0200	1	0	0	0	0	1	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0201	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0202	1	0	1	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0203	1	0	1	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0204	1	0	0	0	1	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0205	1	0	0	0	1	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0206	1	0	0	0	1	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0207	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0208	1	0	0	0	0	1	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0209	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0210	1	0	0	0	0	1	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0211	1	0	0	0	1	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0212	1	0	1	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0213	1	0	0	0	0	1	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0214	1	0	0	0	0	1	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0215	1	0	1	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0216	1	0	1	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0217	1	0	1	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0218	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0219	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0220	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0221	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0222	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0223	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0224	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0225	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0226	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0227	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0228	1	1	0	0	0	0	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	g0229	1	0	0	1	0	0	VSIG1	chrX	108040065	108084184
VSIG2_chr11_124742474_124757255	1/0	g0001	131	2	30	74	7	17	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0002	34	10	1	18	0	5	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0003	24	4	1	14	0	5	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0004	20	2	0	18	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0005	14	0	8	0	4	2	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0006	13	13	0	0	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0007	12	0	0	8	1	3	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/1	g0008	12	1	5	5	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0009	9	0	8	0	0	1	VSIG2	chr11	124742474	124757255