JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VSIG2_chr11_124742474_124757255	0/0	g0060	1	0	1	0	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0061	1	0	0	0	0	1	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0062	1	0	0	1	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0063	1	0	0	1	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0064	1	0	1	0	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0065	1	0	0	1	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0066	1	0	0	0	0	1	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0067	1	0	0	0	0	1	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0068	1	1	0	0	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0069	1	1	0	0	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0070	1	1	0	0	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0071	1	0	0	1	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0072	1	0	0	1	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0073	1	0	0	1	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0074	1	0	0	1	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0075	1	0	0	1	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0076	1	0	0	1	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0077	1	1	0	0	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0078	1	1	0	0	0	0	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	g0079	1	1	0	0	0	0	VSIG2	chr11	124742474	124757255
VSIG4_chrX_66016738_66045080	0/0	g0001	9	0	0	6	0	3	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0002	7	0	0	3	0	4	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0003	6	0	0	6	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0004	4	4	0	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0005	4	0	4	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0006	3	0	3	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0007	3	0	0	3	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0008	3	0	0	3	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0009	2	2	0	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0010	2	0	2	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0011	2	0	1	0	0	1	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0012	2	0	0	2	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0013	2	0	0	0	2	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0014	2	0	0	2	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0015	2	0	0	0	0	2	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0016	2	0	0	2	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0017	2	0	0	1	0	1	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0018	2	2	0	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0019	2	0	0	2	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0020	2	0	0	2	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0021	2	2	0	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0022	1	1	0	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0023	1	1	0	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0024	1	1	0	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0025	1	1	0	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0026	1	1	0	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0027	1	0	0	0	1	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0028	1	1	0	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0029	1	0	1	0	0	0	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	g0030	1	0	0	0	0	1	VSIG4	chrX	66016738	66045080