JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VSIG8_chr1_159849316_159867657	0/0	g0107	1	0	0	1	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0108	1	0	1	0	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0109	1	0	1	0	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0110	1	0	0	0	0	1	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0111	1	1	0	0	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0112	1	1	0	0	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0113	1	0	0	1	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0114	1	0	0	1	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0115	1	0	0	1	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0116	1	0	0	1	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0117	1	0	1	0	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0118	1	1	0	0	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0119	1	1	0	0	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0120	1	0	1	0	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0121	1	0	1	0	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0122	1	0	0	0	0	1	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0123	1	0	0	0	0	1	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0124	1	0	0	1	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0125	1	0	0	0	1	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0126	1	0	0	0	0	1	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0127	1	0	0	1	0	0	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0128	1	0	0	0	0	1	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	g0129	1	1	0	0	0	0	VSIG8	chr1	159849316	159867657
VSIR_chr10_71742556_71778520	0/0	g0001	10	0	0	10	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0002	9	0	3	5	0	1	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0003	9	0	0	9	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0004	6	2	1	0	0	3	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0005	6	0	1	2	0	3	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0006	6	0	1	5	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0007	6	0	0	6	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0008	5	0	0	5	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0009	4	0	0	4	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0010	4	0	4	0	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0011	4	0	0	4	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0012	4	0	0	4	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0013	3	0	0	0	3	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0014	3	0	0	3	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0015	3	0	0	3	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0016	3	0	0	3	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0017	3	0	0	3	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0018	3	0	0	3	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0019	3	0	0	3	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0020	3	3	0	0	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0021	3	0	3	0	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0022	3	0	0	3	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0023	2	0	0	0	0	2	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0024	2	0	2	0	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0025	2	1	1	0	0	0	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0026	2	0	1	0	0	1	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	g0027	2	0	0	2	0	0	VSIR	chr10	71742556	71778520