JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VSTM1_chr19_54035825_54068897	0/0	g0361	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0362	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0363	1	0	0	0	0	1	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0364	1	0	0	0	0	1	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0365	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0366	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0367	1	0	1	0	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0368	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0369	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0370	1	0	1	0	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0371	1	0	0	0	0	1	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0372	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0373	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0374	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0375	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0376	1	1	0	0	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0377	1	1	0	0	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0378	1	1	0	0	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0379	1	1	0	0	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0380	1	1	0	0	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0381	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	g0382	1	0	0	1	0	0	VSTM1	chr19	54035825	54068897
VSTM2A_chr7_54537375_54576067	0/0	g0001	20	1	2	9	2	6	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0002	11	0	0	10	0	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0003	9	0	1	8	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0004	9	2	0	7	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0005	8	2	4	0	1	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0006	6	0	2	3	0	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0007	6	0	2	4	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0008	6	0	6	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0009	6	0	0	6	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0010	6	0	5	0	1	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0011	5	0	4	0	0	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0012	5	5	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0013	5	5	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0014	4	0	0	4	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0015	4	3	1	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0016	4	4	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0017	4	2	1	0	1	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0018	3	0	3	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0019	3	0	0	2	0	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0020	3	0	0	3	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0021	3	3	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0022	3	0	0	3	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/1	g0023	3	0	1	0	0	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0024	3	0	3	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0025	3	0	3	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0026	3	0	0	3	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0027	3	0	2	0	0	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0028	3	0	0	2	0	1	VSTM2A	chr7	54537375	54576067