JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BPIFB4_chr20_33074643_33116751	0/0	g0275	1	0	0	1	0	0	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	g0276	1	0	0	1	0	0	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	g0277	1	0	0	1	0	0	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	g0278	1	0	0	1	0	0	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	g0279	1	0	0	1	0	0	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	g0280	1	0	0	1	0	0	BPIFB4	chr20	33074643	33116751
BPIFB6_chr20_33026648_33049047	0/0	g0001	84	4	17	49	3	11	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0002	79	8	17	42	4	8	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	1/0	g0003	18	5	7	1	2	2	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0004	14	6	3	2	0	3	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0005	10	10	0	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0006	8	8	0	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0007	8	8	0	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0008	7	0	3	4	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0009	7	0	7	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0010	7	0	0	7	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0011	5	5	0	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0012	5	4	1	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0013	5	0	0	5	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0014	5	1	1	2	0	1	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0015	4	3	1	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0016	4	3	1	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0017	4	4	0	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0018	4	4	0	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0019	3	0	0	3	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0020	3	0	1	0	2	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/1	g0021	3	0	0	0	0	2	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0022	3	0	1	1	0	1	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0023	3	0	0	3	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0024	3	0	0	3	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0025	3	0	0	3	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0026	2	0	0	2	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0027	2	0	0	0	1	1	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0028	2	0	0	2	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0029	2	0	2	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0030	2	0	0	0	2	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0031	2	0	1	0	1	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0032	2	2	0	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0033	2	2	0	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0034	2	2	0	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0035	2	1	1	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0036	2	1	1	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0037	2	0	1	0	1	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0038	2	1	0	0	1	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0039	2	0	0	0	0	2	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0040	2	0	0	0	0	2	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0041	1	0	0	0	1	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0042	1	0	0	0	0	1	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0043	1	1	0	0	0	0	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	g0044	1	0	0	1	0	0	BPIFB6	chr20	33026648	33049047