JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VSTM2A_chr7_54537375_54576067	0/0	g0179	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0180	1	0	0	0	0	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0181	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0182	1	0	0	0	0	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0183	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0184	1	0	0	0	0	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0185	1	0	0	0	1	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0186	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0187	1	0	0	0	0	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0188	1	0	0	0	0	1	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0189	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0190	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0191	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0192	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0193	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0194	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0195	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0196	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0197	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0198	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0199	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0200	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0201	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0202	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0203	1	0	0	1	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0204	1	0	1	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0205	1	0	1	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0206	1	0	1	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0207	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0208	1	0	1	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0209	1	0	1	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0210	1	0	1	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0211	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0212	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0213	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0214	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0215	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0216	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	g0217	1	1	0	0	0	0	VSTM2A	chr7	54537375	54576067
VSTM2B_chr19_29520994_29569551	0/0	g0001	5	0	0	5	0	0	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	g0002	4	0	1	3	0	0	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	g0003	3	0	3	0	0	0	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	g0004	3	0	0	3	0	0	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	g0005	3	0	0	3	0	0	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	g0006	3	0	3	0	0	0	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	g0007	3	0	3	0	0	0	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	g0008	3	0	0	3	0	0	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	g0009	3	0	0	3	0	0	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	g0010	3	0	3	0	0	0	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	g0011	2	0	0	2	0	0	VSTM2B	chr19	29520994	29569551