JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VSTM4_chr10_49009236_49120522	0/0	g0242	1	0	1	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0243	1	0	0	1	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0244	1	0	0	0	0	1	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0245	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0246	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0247	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0248	1	0	1	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0249	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0250	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0251	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0252	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0253	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0254	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0255	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0256	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0257	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0258	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0259	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0260	1	0	0	1	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0261	1	0	0	0	1	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0262	1	0	1	0	0	0	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0263	1	0	0	0	0	1	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	g0264	1	1	0	0	0	0	VSTM4	chr10	49009236	49120522
VSTM5_chr11_93813232_93855618	0/0	g0001	12	0	0	12	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0002	6	0	0	6	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0003	4	4	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0004	4	0	3	1	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0005	4	0	1	2	0	1	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0006	4	1	0	2	0	1	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0007	4	0	0	4	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0008	3	0	0	0	2	1	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0009	3	3	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0010	3	0	0	3	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0011	3	0	1	2	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0012	3	0	3	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0013	3	1	2	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0014	3	1	1	0	0	1	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0015	3	3	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0016	3	0	0	3	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0017	3	3	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0018	2	2	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0019	2	0	0	2	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0020	2	0	0	2	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0021	2	2	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0022	2	0	1	0	0	1	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0023	2	2	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0024	2	0	0	2	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0025	2	0	1	1	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0026	2	0	0	0	0	2	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0027	2	0	2	0	0	0	VSTM5	chr11	93813232	93855618