JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VSTM5_chr11_93813232_93855618	0/0	g0278	1	1	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0279	1	0	0	1	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0280	1	1	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0281	1	1	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0282	1	0	1	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0283	1	0	0	0	1	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0284	1	1	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0285	1	1	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0286	1	1	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0287	1	1	0	0	0	0	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	g0288	1	1	0	0	0	0	VSTM5	chr11	93813232	93855618
VSX1_chr20_25070463_25087141	0/1	g0001	130	34	16	54	4	21	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0002	67	1	6	54	0	6	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0003	47	11	15	3	4	14	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	1/0	g0004	15	1	8	0	5	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0005	13	13	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0006	9	9	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0007	8	4	4	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0008	7	7	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0009	6	0	5	0	0	1	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0010	5	2	3	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0011	4	0	3	0	0	1	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0012	3	0	0	3	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0013	3	0	0	3	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0014	3	0	0	3	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0015	3	0	0	3	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0016	2	2	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0017	2	1	1	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0018	2	0	0	2	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0019	2	0	2	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0020	2	2	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0021	2	2	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0022	2	2	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0023	2	0	1	0	1	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0024	1	0	0	1	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0025	1	1	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0026	1	0	1	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0027	1	1	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0028	1	0	1	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0029	1	0	0	0	0	1	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0030	1	1	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0031	1	0	0	0	0	1	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0032	1	1	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0033	1	1	0	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0034	1	0	0	1	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0035	1	0	0	1	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0036	1	0	0	1	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0037	1	0	1	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0038	1	0	1	0	0	0	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	g0039	1	1	0	0	0	0	VSX1	chr20	25070463	25087141