JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	SAS	genename	chr	start	end
VSX2_chr14_74234449_74267738	0/0	g0338	1	0	0	1	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0339	1	0	0	1	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0340	1	0	0	1	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0341	1	0	0	1	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0342	1	1	0	0	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0343	1	1	0	0	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0344	1	0	0	1	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0345	1	0	0	1	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0346	1	0	0	1	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0347	1	0	0	1	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0348	1	0	0	1	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0349	1	1	0	0	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0350	1	0	1	0	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0351	1	0	1	0	0	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	g0352	1	0	1	0	0	VSX2	chr14	74234449	74267738
VTA1_chr6_142142263_142229685	0/0	g0001	4	0	0	4	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0002	2	0	2	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0003	2	0	0	2	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0004	2	2	0	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0005	2	2	0	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0006	2	2	0	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0007	2	0	2	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0008	2	0	2	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0009	2	0	0	2	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0010	2	0	0	2	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0011	2	1	1	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0012	1	1	0	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0013	1	1	0	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0014	1	1	0	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0015	1	1	0	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0016	1	1	0	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0017	1	1	0	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0018	1	1	0	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0019	1	1	0	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0020	1	0	0	1	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0021	1	0	0	1	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0022	1	0	0	1	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0023	1	0	0	0	1	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0024	1	0	0	1	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0025	1	0	1	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0026	1	0	0	1	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0027	1	0	1	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0028	1	0	1	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0029	1	0	0	1	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0030	1	0	0	0	1	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0031	1	0	0	1	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0032	1	0	1	0	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0033	1	0	0	0	1	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0034	1	0	0	1	0	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	g0035	1	1	0	0	0	VTA1	chr6	142142263	142229685