JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BPIFC_chr22_32408845_32469446	0/0	g0400	1	0	0	0	1	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0401	1	0	1	0	0	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0402	1	0	1	0	0	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0403	1	0	1	0	0	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0404	1	0	0	0	0	1	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0405	1	0	0	0	1	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0406	1	0	1	0	0	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0407	1	0	1	0	0	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0408	1	0	0	0	1	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0409	1	0	0	0	1	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0410	1	0	0	0	1	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0411	1	0	1	0	0	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0412	1	0	0	0	1	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0413	1	0	0	1	0	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0414	1	0	0	1	0	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0415	1	1	0	0	0	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0416	1	1	0	0	0	0	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	g0417	1	1	0	0	0	0	BPIFC	chr22	32408845	32469446
BPI_chr20_38299156_38342505	0/0	g0001	12	0	6	6	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0002	8	0	2	6	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/1	g0003	6	1	3	1	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0004	5	0	2	0	0	3	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0005	5	0	0	5	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0006	3	0	0	3	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0007	3	3	0	0	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0008	3	3	0	0	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0009	3	0	0	3	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0010	3	0	1	0	0	2	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0011	3	0	0	3	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0012	3	0	0	2	0	1	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0013	3	0	0	3	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0014	3	0	0	3	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0015	2	0	0	2	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0016	2	0	2	0	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0017	2	0	0	2	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0018	2	0	2	0	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0019	2	2	0	0	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0020	2	0	2	0	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0021	2	0	1	0	1	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0022	2	0	0	2	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0023	2	0	0	2	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0024	2	2	0	0	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0025	2	0	0	0	0	2	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0026	2	0	0	0	2	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0027	2	0	0	2	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0028	2	0	0	2	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0029	2	0	0	2	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0030	2	0	0	2	0	0	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0031	2	0	0	0	0	2	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	g0032	2	0	0	0	0	2	BPI	chr20	38299156	38342505