JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
WASHC2C_chr10_45722266_45797964	0/0	g0339	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/1	g0340	1	0	0	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0341	1	0	0	1	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0342	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0343	1	0	0	1	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0344	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0345	1	0	0	1	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0346	1	0	0	1	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0347	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0348	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0349	1	0	0	1	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0350	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0351	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0352	1	1	0	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0353	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0354	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0355	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0356	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0357	1	0	0	0	0	1	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0358	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0359	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0360	1	0	0	1	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0361	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0362	1	0	0	0	0	1	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0363	1	1	0	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0364	1	0	1	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0365	1	0	0	0	0	1	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0366	1	0	0	0	1	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0367	1	0	0	1	0	0	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	g0368	1	1	0	0	0	0	WASHC2C	chr10	45722266	45797964
WASHC3_chr12_102007840_102066991	0/0	g0001	9	0	3	3	2	1	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0002	9	0	2	7	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0003	6	0	1	4	0	1	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0004	6	0	0	6	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0005	5	0	0	5	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0006	4	0	0	4	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0007	4	0	0	4	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0008	3	0	2	0	1	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0009	3	0	0	3	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0010	3	0	0	3	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0011	3	0	0	3	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0012	3	0	0	3	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0013	2	2	0	0	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0014	2	0	2	0	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0015	2	0	0	2	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0016	2	0	0	2	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0017	2	2	0	0	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0018	2	2	0	0	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0019	2	2	0	0	0	0	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	g0020	2	0	2	0	0	0	WASHC3	chr12	102007840	102066991