JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
WDR12_chr2_202869261_202916673	0/0	g0319	1	0	0	0	0	1	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0320	1	0	0	1	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0321	1	0	0	1	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0322	1	0	0	1	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0323	1	0	1	0	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0324	1	1	0	0	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0325	1	1	0	0	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0326	1	0	0	1	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0327	1	1	0	0	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0328	1	1	0	0	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0329	1	0	1	0	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0330	1	0	1	0	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0331	1	0	1	0	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0332	1	0	0	1	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0333	1	0	0	1	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0334	1	0	1	0	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0335	1	0	0	1	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0336	1	0	0	0	1	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0337	1	0	1	0	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0338	1	0	1	0	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0339	1	0	0	0	1	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0340	1	0	0	0	1	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0341	1	0	0	0	1	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0342	1	0	0	1	0	0	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	g0343	1	1	0	0	0	0	WDR12	chr2	202869261	202916673
WDR13_chrX_48592492_48613869	0/1	g0001	92	16	20	38	5	12	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0002	75	1	13	52	3	6	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	1/0	g0003	11	7	1	0	1	1	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0004	10	8	1	1	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0005	9	1	2	4	0	2	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0006	8	6	2	0	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0007	7	0	0	7	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0008	6	6	0	0	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0009	4	4	0	0	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0010	4	0	0	4	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0011	4	0	0	4	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0012	3	3	0	0	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0013	3	1	2	0	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0014	3	1	0	2	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0015	3	0	0	3	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0016	2	2	0	0	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0017	2	2	0	0	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0018	2	0	2	0	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0019	2	2	0	0	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0020	2	2	0	0	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0021	2	2	0	0	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0022	2	0	1	0	0	1	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0023	2	0	1	0	0	1	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0024	1	0	0	1	0	0	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	g0025	1	0	1	0	0	0	WDR13	chrX	48592492	48613869