JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
WDR20_chr14_102134897_102215527	0/0	g0261	1	1	0	0	0	0	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	g0262	1	1	0	0	0	0	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	g0263	1	1	0	0	0	0	WDR20	chr14	102134897	102215527
WDR24_chr16_679622_695398	0/0	g0001	141	12	21	81	3	24	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0002	70	5	19	31	2	13	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0003	15	8	1	4	0	2	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	1/0	g0004	13	1	8	0	3	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0005	12	0	2	0	3	7	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0006	10	0	10	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0007	8	8	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0008	8	7	1	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0009	6	5	1	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0010	6	0	0	6	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0011	5	4	1	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0012	4	4	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0013	3	0	0	2	1	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0014	3	3	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0015	3	3	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0016	3	3	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0017	2	2	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0018	2	2	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0019	2	2	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0020	2	0	0	0	0	2	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0021	2	1	1	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0022	2	0	2	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0023	2	2	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0024	2	0	0	2	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0025	2	0	0	2	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0026	2	2	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0027	2	2	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0028	1	0	1	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0029	1	0	1	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0030	1	0	1	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0031	1	1	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0032	1	1	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0033	1	0	0	1	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0034	1	1	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0035	1	1	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0036	1	0	1	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0037	1	1	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0038	1	0	1	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0039	1	0	0	1	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0040	1	0	0	0	0	1	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0041	1	0	0	0	0	1	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0042	1	0	0	1	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0043	1	1	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0044	1	1	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0045	1	1	0	0	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0046	1	0	0	1	0	0	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	g0047	1	0	0	1	0	0	WDR24	chr16	679622	695398