JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
WDR53_chr3_196549177_196573554	0/0	g0171	1	0	0	1	0	0	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	g0172	1	1	0	0	0	0	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	g0173	1	1	0	0	0	0	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	g0174	1	1	0	0	0	0	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	g0175	1	1	0	0	0	0	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	g0176	1	1	0	0	0	0	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	g0177	1	0	1	0	0	0	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	g0178	1	1	0	0	0	0	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	g0179	1	1	0	0	0	0	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	g0180	1	1	0	0	0	0	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	g0181	1	1	0	0	0	0	WDR53	chr3	196549177	196573554
WDR54_chr2_74416730_74430755	0/0	g0001	170	44	34	68	9	15	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0002	83	9	9	58	1	6	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0003	27	0	1	25	0	1	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0004	19	3	6	7	0	3	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	1/0	g0005	17	12	0	2	0	2	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0006	8	8	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0007	7	6	1	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0008	7	0	0	7	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0009	5	5	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0010	4	0	1	3	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/1	g0011	4	0	2	0	0	1	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0012	2	0	2	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0013	2	0	0	0	0	2	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0014	2	2	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0015	2	0	0	0	0	2	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0016	2	0	0	2	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0017	2	0	0	0	2	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0018	2	0	2	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0019	2	0	2	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0020	2	2	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0021	1	0	0	0	0	1	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0022	1	1	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0023	1	1	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0024	1	0	1	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0025	1	1	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0026	1	0	0	1	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0027	1	1	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0028	1	0	1	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0029	1	0	0	0	0	1	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0030	1	0	0	1	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0031	1	1	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0032	1	0	0	1	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0033	1	0	1	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0034	1	0	1	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0035	1	0	0	1	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0036	1	0	0	1	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0037	1	1	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0038	1	0	1	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0039	1	0	1	0	0	0	WDR54	chr2	74416730	74430755