JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
WDR54_chr2_74416730_74430755	0/0	g0040	1	0	0	1	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0041	1	0	0	1	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0042	1	0	0	1	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0043	1	1	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0044	1	1	0	0	0	0	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	g0045	1	1	0	0	0	0	WDR54	chr2	74416730	74430755
WDR55_chr5_140659904_140677345	1/0	g0001	168	41	26	75	4	21	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/1	g0002	88	2	14	53	8	10	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0003	39	13	3	19	0	4	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0004	33	7	5	15	3	3	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0005	11	7	4	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0006	6	5	1	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0007	4	4	0	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0008	4	4	0	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0009	3	2	0	1	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0010	3	0	0	3	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0011	3	2	1	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0012	3	3	0	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0013	2	2	0	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0014	2	2	0	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0015	1	0	0	1	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0016	1	0	1	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0017	1	0	1	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0018	1	0	1	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0019	1	0	0	0	1	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0020	1	1	0	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0021	1	0	0	1	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0022	1	1	0	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0023	1	0	1	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0024	1	0	0	1	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0025	1	1	0	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0026	1	1	0	0	0	0	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	g0027	1	0	0	1	0	0	WDR55	chr5	140659904	140677345
WDR59_chr16_74866362_74990123	0/0	g0001	1	0	0	1	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0002	1	0	0	1	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0003	1	0	0	0	0	1	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0004	1	1	0	0	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0005	1	1	0	0	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0006	1	1	0	0	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0007	1	0	0	1	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0008	1	0	0	1	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0009	1	1	0	0	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0010	1	0	1	0	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0011	1	0	0	1	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0012	1	0	0	1	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0013	1	0	0	1	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0014	1	0	0	1	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0015	1	0	0	1	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0016	1	0	1	0	0	0	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	g0017	1	0	1	0	0	0	WDR59	chr16	74866362	74990123