JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
WFDC10B_chr20_45679651_45710019	0/0	g0211	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0212	1	0	0	0	0	1	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0213	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0214	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0215	1	0	0	0	0	1	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0216	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0217	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0218	1	0	0	0	0	1	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0219	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0220	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0221	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0222	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0223	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0224	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0225	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0226	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0227	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0228	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0229	1	0	0	1	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0230	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0231	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0232	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0233	1	0	1	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0234	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0235	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0236	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0237	1	0	1	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0238	1	0	0	0	0	1	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0239	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0240	1	0	0	0	0	1	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0241	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0242	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0243	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0244	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0245	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	g0246	1	1	0	0	0	0	WFDC10B	chr20	45679651	45710019
WFDC11_chr20_45643563_45675239	0/0	g0001	36	1	7	26	1	1	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0002	29	1	2	21	2	3	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0003	19	0	1	18	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	1/0	g0004	15	1	8	0	1	4	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0005	12	8	0	2	0	2	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0006	9	0	3	5	0	1	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0007	8	0	0	8	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0008	7	6	1	0	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0009	6	5	1	0	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0010	6	0	0	6	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0011	6	0	0	6	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0012	6	2	0	2	0	2	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0013	6	1	2	3	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0014	6	5	1	0	0	0	WFDC11	chr20	45643563	45675239