JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
WFDC11_chr20_45643563_45675239	0/0	g0165	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0166	1	0	1	0	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0167	1	0	0	0	1	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0168	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0169	1	0	1	0	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0170	1	0	1	0	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0171	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0172	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0173	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0174	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0175	1	0	1	0	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0176	1	0	1	0	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0177	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0178	1	0	0	0	1	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0179	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0180	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0181	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0182	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0183	1	0	1	0	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0184	1	1	0	0	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0185	1	1	0	0	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0186	1	0	0	1	0	0	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0187	1	0	0	0	0	1	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0188	1	0	0	0	0	1	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	g0189	1	1	0	0	0	0	WFDC11	chr20	45643563	45675239
WFDC12_chr20_45118425_45129465	1/1	g0001	290	39	44	164	11	30	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	g0002	65	21	19	18	1	6	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	g0003	34	9	9	10	2	4	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	g0004	21	19	2	0	0	0	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	g0005	4	4	0	0	0	0	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	g0006	2	0	0	0	0	2	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	g0007	1	0	0	1	0	0	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	g0008	1	1	0	0	0	0	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	g0009	1	0	0	1	0	0	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	g0010	1	1	0	0	0	0	WFDC12	chr20	45118425	45129465
WFDC13_chr20_45697038_45713817	0/0	g0001	101	25	10	52	4	10	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0002	66	1	18	40	4	3	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0003	48	0	0	41	0	7	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	1/1	g0004	30	2	12	0	5	9	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0005	19	0	1	18	0	0	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0006	18	0	2	16	0	0	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0007	12	0	1	11	0	0	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0008	11	10	1	0	0	0	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0009	11	9	2	0	0	0	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0010	10	0	0	10	0	0	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0011	8	0	0	6	1	1	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0012	8	1	1	6	0	0	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0013	8	1	7	0	0	0	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0014	7	6	1	0	0	0	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	g0015	6	0	4	0	0	2	WFDC13	chr20	45697038	45713817