JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
WFDC2_chr20_45464753_45486532	0/0	g0053	1	1	0	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0054	1	1	0	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0055	1	0	0	1	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0056	1	0	1	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0057	1	1	0	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0058	1	0	0	1	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0059	1	0	0	1	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0060	1	0	1	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0061	1	0	0	1	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0062	1	1	0	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0063	1	0	0	0	1	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0064	1	0	1	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0065	1	0	1	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0066	1	1	0	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0067	1	0	1	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0068	1	1	0	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0069	1	0	0	1	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0070	1	0	0	0	1	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0071	1	0	1	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0072	1	0	0	1	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0073	1	0	1	0	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0074	1	0	0	0	0	1	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0075	1	0	0	1	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0076	1	0	0	1	0	0	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	g0077	1	0	0	0	0	1	WFDC2	chr20	45464753	45486532
WFDC3_chr20_45769213_45796883	0/0	g0001	6	6	0	0	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0002	5	0	0	5	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0003	5	0	1	3	1	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0004	4	0	0	4	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0005	3	0	0	1	2	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0006	3	3	0	0	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0007	2	0	2	0	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0008	2	0	2	0	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	1/0	g0009	2	0	1	0	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0010	2	0	0	0	0	2	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0011	2	2	0	0	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0012	2	1	0	1	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0013	2	0	0	2	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0014	2	0	2	0	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0015	2	0	0	2	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0016	2	0	0	2	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0017	2	0	2	0	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0018	2	0	2	0	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0019	2	0	0	2	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0020	2	0	0	0	1	1	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0021	2	1	1	0	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0022	2	0	0	2	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0023	2	0	0	2	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0024	2	0	0	2	0	0	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	g0025	2	0	0	0	2	0	WFDC3	chr20	45769213	45796883