JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
WFDC5_chr20_45104463_45120174	0/0	g0056	1	0	0	1	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0057	1	1	0	0	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0058	1	1	0	0	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0059	1	0	0	1	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0060	1	0	0	1	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0061	1	0	0	1	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0062	1	1	0	0	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0063	1	1	0	0	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0064	1	1	0	0	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0065	1	1	0	0	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0066	1	0	0	0	0	1	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0067	1	0	0	1	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0068	1	0	0	1	0	0	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	g0069	1	0	1	0	0	0	WFDC5	chr20	45104463	45120174
WFDC6_chr20_45529196_45544482	1/0	g0001	99	17	11	57	3	10	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0002	80	2	22	49	3	4	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0003	60	23	24	1	5	7	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0004	41	2	3	28	0	8	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0005	25	10	3	11	0	1	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0006	21	1	2	16	0	2	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0007	18	0	0	18	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0008	17	11	2	0	0	4	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0009	12	0	0	12	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0010	8	1	7	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0011	5	0	3	0	1	1	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0012	4	3	1	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0013	4	4	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0014	4	2	1	1	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0015	3	3	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0016	3	2	1	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0017	3	2	1	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0018	3	0	0	3	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0019	2	2	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0020	2	2	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0021	2	0	0	2	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0022	2	0	0	0	2	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0023	2	0	2	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0024	2	0	0	0	0	2	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0025	1	0	0	1	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0026	1	0	0	1	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0027	1	1	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0028	1	1	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0029	1	0	0	1	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0030	1	0	0	1	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0031	1	0	0	1	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0032	1	0	0	0	0	1	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0033	1	0	0	0	0	1	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0034	1	0	0	1	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0035	1	0	0	1	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0036	1	0	0	1	0	0	WFDC6	chr20	45529196	45544482