JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
WFDC6_chr20_45529196_45544482	0/0	g0037	1	0	0	0	0	1	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0038	1	0	0	0	0	1	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0039	1	1	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0040	1	0	1	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0041	1	1	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/1	g0042	1	0	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0043	1	1	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0044	1	1	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0045	1	1	0	0	0	0	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	g0046	1	0	0	0	0	1	WFDC6	chr20	45529196	45544482
WFDC8_chr20_45546762_45584284	0/0	g0001	17	0	9	8	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0002	16	0	2	12	0	2	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0003	14	0	1	7	2	4	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0004	13	11	2	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0005	12	0	1	6	0	5	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0006	12	2	1	7	0	2	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0007	11	0	0	11	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0008	11	1	0	10	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0009	9	8	1	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0010	7	0	0	7	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0011	7	1	2	0	3	1	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0012	6	0	0	6	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0013	6	0	0	6	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0014	6	6	0	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0015	6	0	0	6	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0016	5	1	4	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0017	5	0	1	4	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0018	4	0	4	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/1	g0019	4	0	1	0	2	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0020	4	0	0	4	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0021	4	2	2	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0022	4	0	1	1	2	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0023	4	0	0	4	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0024	3	0	0	3	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0025	3	0	3	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0026	3	1	2	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0027	3	0	0	3	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0028	3	1	0	1	0	1	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0029	3	3	0	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0030	3	2	0	1	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0031	3	0	0	3	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0032	3	3	0	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0033	3	3	0	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0034	3	2	1	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0035	2	0	1	0	0	1	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0036	2	2	0	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0037	2	0	0	2	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0038	2	0	0	2	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0039	2	0	0	0	0	2	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0040	2	0	0	2	0	0	WFDC8	chr20	45546762	45584284