JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
WFDC8_chr20_45546762_45584284	0/0	g0191	1	0	1	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0192	1	1	0	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0193	1	0	0	0	0	1	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0194	1	0	1	0	0	0	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	g0195	1	0	1	0	0	0	WFDC8	chr20	45546762	45584284
WFDC9_chr20_45602939_45636284	0/0	g0001	27	0	6	20	0	1	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	1/1	g0002	25	4	14	0	2	3	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0003	24	3	2	15	0	4	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0004	17	0	2	9	3	3	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0005	14	0	5	9	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0006	14	1	0	11	0	2	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0007	14	7	1	3	0	3	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0008	13	1	0	10	0	2	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0009	9	8	1	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0010	8	0	0	8	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0011	8	1	7	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0012	8	0	4	3	0	1	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0013	6	0	0	6	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0014	6	0	4	0	0	2	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0015	5	0	0	5	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0016	5	1	0	4	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0017	5	1	1	2	0	1	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0018	5	0	0	5	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0019	4	0	0	4	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0020	4	0	0	4	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0021	4	4	0	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0022	4	4	0	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0023	3	3	0	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0024	3	0	0	3	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0025	3	0	0	3	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0026	3	3	0	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0027	3	3	0	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0028	3	0	0	3	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0029	2	2	0	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0030	2	2	0	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0031	2	0	2	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0032	2	2	0	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0033	2	0	0	0	0	2	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0034	2	2	0	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0035	2	1	0	0	0	1	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0036	2	0	2	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0037	2	0	0	2	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0038	2	0	0	2	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0039	2	0	0	2	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0040	2	0	0	2	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0041	2	2	0	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0042	2	1	1	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0043	1	1	0	0	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0044	1	0	0	1	0	0	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	g0045	1	1	0	0	0	0	WFDC9	chr20	45602939	45636284