JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACKR3_chr2_236564825_236587354	0/0	g0139	1	0	0	1	0	0	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	g0140	1	1	0	0	0	0	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	g0141	1	1	0	0	0	0	ACKR3	chr2	236564825	236587354
ACKR4_chr3_132592270_132607644	1/0	g0001	126	17	39	46	9	14	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/1	g0002	117	19	6	79	4	8	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0003	26	24	2	0	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0004	26	22	4	0	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0005	23	1	5	14	0	3	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0006	10	0	1	9	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0007	6	0	3	0	1	2	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0008	5	1	0	4	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0009	3	0	0	3	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0010	2	2	0	0	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0011	1	1	0	0	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0012	1	0	0	0	0	1	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0013	1	1	0	0	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0014	1	0	0	1	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0015	1	1	0	0	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0016	1	0	1	0	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0017	1	1	0	0	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0018	1	1	0	0	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0019	1	0	0	0	0	1	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0020	1	0	0	1	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0021	1	0	0	1	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0022	1	0	1	0	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0023	1	1	0	0	0	0	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	g0024	1	0	0	0	0	1	ACKR4	chr3	132592270	132607644
ACLY_chr17_41861918_41923951	0/0	g0001	2	0	1	0	1	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0002	1	0	0	1	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0003	1	0	0	1	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0004	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0005	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0006	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0007	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0008	1	0	0	0	0	1	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0009	1	0	1	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0010	1	0	0	0	0	1	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0011	1	0	1	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0012	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0013	1	0	0	1	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0014	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0015	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0016	1	0	0	1	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0017	1	0	0	0	0	1	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0018	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0019	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0020	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0021	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0022	1	1	0	0	0	0	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	g0023	1	1	0	0	0	0	ACLY	chr17	41861918	41923951